Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015945035.1_cds_XP_016487701.1_78406
CDS Infomation

[gene=LOC107807777] [db_xref=GeneID:107807777] [protein=ribosomal RNA large subunit methyltransferase F-like] [protein_id=XP_016487701.1] [location=join(51400..51626,52602..52807,52932..53391,53499..53706,55118..55225,55306..55434,55567..55636,56150..56220)] [gbkey=CDS]
Sequence

ATGGGGCACAAGAAGAGGAAGAGAGGGGAGAGAGCCACTACCCATCCCCGTAACAAGTAC
TTTGATAACCCACCAGATTTCTCCGTCTTGGCCTCTAAATACTCTACCTTTGCACCTTAC
GTTTTCTATTCAGGTGATGGTCGTCGACCAAAAATTGATTGGACTGACTTCAATGCTACA
CGTGAACTCACCAGAGTTCTGCTCCACCATGATCATGGCCTCAATTGGTGGATTCCTGAT
GGACAACTTTGCCCTACAGTCCCCAACAGATCTAACTATATTCATTGGATTGAAGATCTT
CTGTCATCGGACATCGTTCCTAAAGTTCAAGATGACAGAAACTGTATTAGGGGTTTTGAT
ATAGGAACGGGAGCTAATTGCATTTACCCTCTTCTCGGTGCATCTCTTATGGGTTGGAAG
TTTGTTGGCTCTGATGTTACCGACGTAGCTTTAGAGTGGGCAGAGAAAAATCTTAAAAGT
AATCCTCATCTTTCTGAATTGATTGAAATCAGAAGAGTTAACATGGAAAACCCATCATCT
TCCAAGGAAAAGCTGAATGATGAACCAGGAAAATATGGCCAATGTAAAGACGTAGACTTC
GACAATGCAGATGCTGCTCTCATTGGACCTTCACCTCCTTCTCATCTCCCAGTGCACCCA
GGTGTAGGAAAAATTTACAATGGACCTCCTATACTTGTCGGCGTAGTCAAGGATGGGGAA
AAATTCGATTTTTGTATGTGCAACCCTCCATTTTTTGAGACGATGGAGGAAGCTGGATTA
AATCCAAAGACTTCTTGTGGCGGGACTATGCAGGAGATGGTTTGTCCTGGTGGAGAGAAT
GCTTTTATTACTCGTATTATTGAGGATAGTGTTCAGTTAAGGGAATCCTTTCGGTGGTAC
ACCTCAATGGTTGGAAGAAAAACTAACCTAAAGGTACTTATATCAAAGCTTTGGGAGGTT
GGAGCAACAATAGTGAAGACAACTGACTTTGTGCAAGGCCAGACATGCCGATGGGGTCTT
GCCTGGTCATTTCTCCCTCTTTCCAAGAAGATGGTACCATCCCACGTGGCTGAGAAGAAT
AACATGTCGTTCATGCTTGAGGGTCTGCAGCGCCATCAGAGTGCCATTGATGTATTGCAA
TCAGTGGAATCCTATTTCTGTAGTATTGGTGCATCCTCTAAATTAGACTCTGCCTCGTTT
AATGTTGATGTAACTTTGTCAGGCAAGCAATGCAAGTCTATCATGAAGACCCGGTCACAG
AATGGAAACGAACAGGATATACCAATATCTGCAAATTATTGCTCTGGCCAACTGAATGAC
ATGCGTCTGCGTGTTTCTGTCTTCCAGCAGATACCAGGGACACTTCTGGTGAGGGGATCA
TTGCTCCAGAAAGAGATCCCTGTATCAGGGGCATTTTCTTTTATATTCCAGCAATTACAG
GAAGTTTTGAAAAGCAAATTCAGTAAAAGCACCAGATGA

Peptide Sequence

PEP ID

XP_016487701.1
PEP Infomation

PREDICTED: ribosomal RNA large subunit methyltransferase F-like [Nicotiana tabacum]
Sequence

MGHKKRKRGERATTHPRNKYFDNPPDFSVLASKYSTFAPYVFYSGDGRRPKIDWTDFNAT
RELTRVLLHHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSDIVPKVQDDRNCIRGFD
IGTGANCIYPLLGASLMGWKFVGSDVTDVALEWAEKNLKSNPHLSELIEIRRVNMENPSS
SKEKLNDEPGKYGQCKDVDFDNADAALIGPSPPSHLPVHPGVGKIYNGPPILVGVVKDGE
KFDFCMCNPPFFETMEEAGLNPKTSCGGTMQEMVCPGGENAFITRIIEDSVQLRESFRWY
TSMVGRKTNLKVLISKLWEVGATIVKTTDFVQGQTCRWGLAWSFLPLSKKMVPSHVAEKN
NMSFMLEGLQRHQSAIDVLQSVESYFCSIGASSKLDSASFNVDVTLSGKQCKSIMKTRSQ
NGNEQDIPISANYCSGQLNDMRLRVSVFQQIPGTLLVRGSLLQKEIPVSGAFSFIFQQLQ
EVLKSKFSKSTR

Transcript Sequence

Gene sequence data has not been registered.